PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000423.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 181aa    MW: 20536.4 Da    PI: 6.3024
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000423.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000143153123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y+C+ C++ F++   L  H++ H
  Itr_sc000423.1_g00004.1 31 YECTFCKRGFTNAQALGGHMNIH 53
                             99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.7E-52957IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.17E-72958No hitNo description
PROSITE profilePS5015711.2193158IPR007087Zinc finger, C2H2
SMARTSM003550.00973153IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MMSSSSDSCG EESEHGPEKF SDENAGVGRS YECTFCKRGF TNAQALGGHM NIHRKDKLKA  60
KQACNNQQKS AELSRKSKSN HEEVYAQISS QQQQQEQSFC SYSSSRAYVK YHQFFFPSSN  120
PSYQFQVLDH RGHYRNFALH GDADLSLRIG SPDDEEQERK EGMEVSEVDL ELRLGPNSAF  180
M
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613300.11e-41PREDICTED: transcriptional regulator TAC1-like
RefseqXP_016482282.11e-41PREDICTED: transcriptional regulator TAC1-like
TrEMBLM1DE904e-35M1DE90_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000876461e-34(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21362152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.11e-15C2H2 family protein